MmuEX0033422 @ mm10
Exon Skipping
Gene
ENSMUSG00000054582 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:MGI Symbol;Acc:MGI:1922908]
Coordinates
chr2:164047481-164050538:+
Coord C1 exon
chr2:164047481-164047574
Coord A exon
chr2:164048011-164048146
Coord C2 exon
chr2:164049977-164050538
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCGGTTTCCCCCAAGCTG
3' ss Score
6.8
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GTCCAGGAGTCGGCCGTGTATGTCCCTGGCCATCAGCCTCTGACTGTGTCCATGCTGGCCGCTGCACCCCTACACGAGCAAAAGCAGATGATTG
Seq A exon
CTGCCTCTTTGAAAGCCTCTGTCCTTTCGTCTTGAAAGACAAGTAGGCTGTTGCTCCCAAGGCCTTTTCCAGCTTGCTGTCTGGCTCTGACTTAGGTGGGAGATATCTGGATATGGGATCAGAGCCAAGAAGCCGG
Seq C2 exon
ATAGAAGAGGCGGTGGCAGTACTGCAGGTGCATCGAGAAATGGAGTCAACAGATAGGAACTGAACTCTGTGGGTTCCTGGGGATGGAAGGACCGACAGAGCGGCTGAGCTGCTGGCTCTCTGGAGACTCCGTAGAGAACCCAGCGATCAAAAACCCACTGTGATGTGTTGGTGGCTTTGTCTGAAGCACCAGGGAGTTTGGTGAAGCTAAAGGAGTCATAGGAGACTTGCAGTGGCTGGATGTTCTCACGCCTGGCTCCGTTCTGCCTGTCTGGAGGCCTGGTCTGCTGGTCCACCTTCTTGACTGAAGATTGGGTGTTTTCCATATTCTGGGAACATTTTTTTCCCTCCACTCCCCCTCCCCCCACCCCCACTGAAAATGGAATCTTCACTCCCTTGACTACTTGATTACTGCATTTCTGCTCTTGGTTCTAGCTGTGTGAACTCTAACTTCTTTCCTGATGGGGATCTCTGTGTTCTTGAGCTCTGATTATGTAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054582_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.328 A=0.000 C2=0.350
Domain overlap (PFAM):
C1:
PF0065813=PABP=PU(27.8=62.5)
A:
NO
C2:
PF0065813=PABP=PD(9.7=33.3)
Main Inclusion Isoform:
ENSMUST00000067715fB2864
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGACTGTGTCCATGCTGG
R:
CCAAACTCCCTGGTGCTTCAG
Band lengths:
258-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types