MmuEX6106806 @ mm10
Exon Skipping
Gene
ENSMUSG00000054582 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:MGI Symbol;Acc:MGI:1922908]
Coordinates
chr2:164045863-164050538:+
Coord C1 exon
chr2:164045863-164045969
Coord A exon
chr2:164047481-164047574
Coord C2 exon
chr2:164049977-164050538
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTTCCTGGCACCATGTGCAGGTC
3' ss Score
5.98
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TCAACATTGGTACCCAGACTACAGGACCAGGTGGGGAGGGATCCTCTATCCCAGGCCAGCTTCTCGTGCCACATAGAGGAACCTCAGCTGTACACAGTGCCCATGGG
Seq A exon
GTCCAGGAGTCGGCCGTGTATGTCCCTGGCCATCAGCCTCTGACTGTGTCCATGCTGGCCGCTGCACCCCTACACGAGCAAAAGCAGATGATTG
Seq C2 exon
ATAGAAGAGGCGGTGGCAGTACTGCAGGTGCATCGAGAAATGGAGTCAACAGATAGGAACTGAACTCTGTGGGTTCCTGGGGATGGAAGGACCGACAGAGCGGCTGAGCTGCTGGCTCTCTGGAGACTCCGTAGAGAACCCAGCGATCAAAAACCCACTGTGATGTGTTGGTGGCTTTGTCTGAAGCACCAGGGAGTTTGGTGAAGCTAAAGGAGTCATAGGAGACTTGCAGTGGCTGGATGTTCTCACGCCTGGCTCCGTTCTGCCTGTCTGGAGGCCTGGTCTGCTGGTCCACCTTCTTGACTGAAGATTGGGTGTTTTCCATATTCTGGGAACATTTTTTTCCCTCCACTCCCCCTCCCCCCACCCCCACTGAAAATGGAATCTTCACTCCCTTGACTACTTGATTACTGCATTTCTGCTCTTGGTTCTAGCTGTGTGAACTCTAACTTCTTTCCTGATGGGGATCTCTGTGTTCTTGAGCTCTGATTATGTAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054582_MULTIEX1-2/4=C1-C2
Average complexity
ME(1-2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=0.328 C2=0.350
Domain overlap (PFAM):
C1:
NO
A:
PF0065813=PABP=PU(27.8=62.5)
C2:
PF0065813=PABP=PD(9.7=33.3)

Main Skipping Isoform:
ENSMUST00000067715fB14144

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGCCACATAGAGGAACCT
R:
CTACGGAGTCTCCAGAGAGCC
Band lengths:
178-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types