GgaEX6022857 @ galGal3
Exon Skipping
Gene
ENSGALG00000004123 | PABPC1L
Description
NA
Coordinates
chr20:5197144-5198224:-
Coord C1 exon
chr20:5198091-5198224
Coord A exon
chr20:5197714-5197807
Coord C2 exon
chr20:5197144-5197274
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTCTGTATTTCTTCACCCAGGTG
3' ss Score
8.95
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CCAACATAGGGACGCAGACGATCAGTGCCCGGGTGCCCTCCTCACCCACCCTGCGAGGCGCCCCGCAGTACAAGTACTCCCTGGCTGTGAGGAACATCCAGCCGATGGGCAGTGTGCCACCCGGGGCTCAGCAG
Seq A exon
GTGGGAGAACCTGCTGTGCACATCCAAGGGCAGGAGCCGCTGACGGCATCCATGCTTGCAGCAGCCCCTCCGCAGGAGCAGAAGCAAATGATAG
Seq C2 exon
GTGAGCGGCTCTACCCCCTGATCCATGCAATGCACGCCTCACTGGCTGGCAAGATCACAGGCATGCTGCTGGAGATCGACAATTCAGAGCTGCTGCTTCTGCTGGAGTCCCCTGAATCCTTGCACTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004123-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.781 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
PF0065813=PABP=PU(27.8=62.5)
C2:
PF0065813=PABP=FE(59.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCCTGGCTGTGAGGAAC
R:
ATTCAGGGGACTCCAGCAGAA
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]