MmuEX6106806 @ mm9
Exon Skipping
Gene
ENSMUSG00000054582 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:MGI Symbol;Acc:MGI:1922908]
Coordinates
chr2:163871599-163875360:+
Coord C1 exon
chr2:163871599-163871705
Coord A exon
chr2:163873217-163873310
Coord C2 exon
chr2:163875230-163875360
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTTCCTGGCACCATGTGCAGGTC
3' ss Score
5.98
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TCAACATTGGTACCCAGACTACAGGACCAGGTGGGGAGGGATCCTCTATCCCAGGCCAGCTTCTCGTGCCACATAGAGGAACCTCAGCTGTACACAGTGCCCATGGG
Seq A exon
GTCCAGGAGTCGGCCGTGTATGTCCCTGGCCATCAGCCTCTGACTGTGTCCATGCTGGCCGCTGCACCCCTACACGAGCAAAAGCAGATGATTG
Seq C2 exon
GGGAGCGTCTCTACTCCCTCATCCACGATGCCTGCGCCCCACTGACTGGCAAGATCACGGGCATGCTGCTGGAGCTGGACAACCTGGAGCTTCTGTTATTGCTGGAGTCCCCAGAGTCCCTCCATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054582-'12-16,'12-14,13-16=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.986 A=0.328 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0065813=PABP=PU(27.8=62.5)
C2:
PF0065813=PABP=FE(59.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATCCCAGGCCAGCTTCTC
R:
TGGGGACTCCAGCAATAACAGA
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: