MmuEX0033423 @ mm9
Exon Skipping
Gene
ENSMUSG00000054582 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:MGI Symbol;Acc:MGI:1922908]
Coordinates
chr2:163873217-163876274:+
Coord C1 exon
chr2:163873217-163873310
Coord A exon
chr2:163875230-163875360
Coord C2 exon
chr2:163875713-163876274
Length
131 bp
Sequences
Splice sites
3' ss Seq
TATCAGGTTGTTCTACACAGGGG
3' ss Score
5.16
5' ss Seq
AAGGCAGGT
5' ss Score
2.53
Exon sequences
Seq C1 exon
GTCCAGGAGTCGGCCGTGTATGTCCCTGGCCATCAGCCTCTGACTGTGTCCATGCTGGCCGCTGCACCCCTACACGAGCAAAAGCAGATGATTG
Seq A exon
GGGAGCGTCTCTACTCCCTCATCCACGATGCCTGCGCCCCACTGACTGGCAAGATCACGGGCATGCTGCTGGAGCTGGACAACCTGGAGCTTCTGTTATTGCTGGAGTCCCCAGAGTCCCTCCATGCCAAG
Seq C2 exon
ATAGAAGAGGCGGTGGCAGTACTGCAGGTGCATCGAGAAATGGAGTCAACAGATAGGAACTGAACTCTGTGGGTTCCTGGGGATGGAAGGACCGACAGAGCGGCTGAGCTGCTGGCTCTCTGGAGACTCCGTAGAGAACCCAGCGATCAAAAACCCACTGTGATGTGTTGGTGGCTTTGTCTGAAGCACCAGGGAGTTTGGTGAAGCTAAAGGAGTCATAGGAGACTTGCAGTGGCTGGATGTTCTCACGCCTGGCTCCGTTCTGCCTGTCTGGAGGCCTGGTCTGCTGGTCCACCTTCTTGACTGAAGATTGGGTGTTTTCCATATTCTGGGAACATTTTTTTCCCTCCACTCCCCCTCCCCCCACCCCCACTGAAAATGGAATCTTCACTCCCTTGACTACTTGATTACTGCATTTCTGCTCTTGGTTCTAGCTGTGTGAACTCTAACTTCTTTCCTGATGGGGATCTCTGTGTTCTTGAGCTCTGATTATGTAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054582_MULTIEX1-2/2=C1-C2
Average complexity
ME(1-2[92=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.328 A=0.000 C2=0.350
Domain overlap (PFAM):
C1:
PF0065813=PABP=PU(27.8=62.5)
A:
PF0065813=PABP=FE(59.7=100)
C2:
PF0065813=PABP=PD(9.7=33.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGACTGTGTCCATGCTGG
R:
CCAAACTCCCTGGTGCTTCAG
Band lengths:
258-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types