GgaEX0005508 @ galGal3
Exon Skipping
Gene
ENSGALG00000004123 | PABPC1L
Description
NA
Coordinates
chr20:5195717-5197807:-
Coord C1 exon
chr20:5197714-5197807
Coord A exon
chr20:5197144-5197274
Coord C2 exon
chr20:5195717-5196405
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTCCCTGGTGCTTCGGGCAGGTG
3' ss Score
7.97
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGGGAGAACCTGCTGTGCACATCCAAGGGCAGGAGCCGCTGACGGCATCCATGCTTGCAGCAGCCCCTCCGCAGGAGCAGAAGCAAATGATAG
Seq A exon
GTGAGCGGCTCTACCCCCTGATCCATGCAATGCACGCCTCACTGGCTGGCAAGATCACAGGCATGCTGCTGGAGATCGACAATTCAGAGCTGCTGCTTCTGCTGGAGTCCCCTGAATCCTTGCACTCCAAG
Seq C2 exon
ATTGAGGAAGCAGTTGCTGTTCTCCAGGCACACCAGGCCACTGAGGCGTCACACAAGGGCAGCACAGCCCCGTTCCTGCAGTGAGCCCGGGTAGGTGCACAGCTGCTGCACGAGCTGCCATCTGCTCAGGGTCTGTGCCTTGTGACTCTGAAGCCTGGGGTTGGGTTTCTTGTCCAGACCAAGTGAAGTTTGATGAGCACCGCAGGAATATTTGCAGTATTTCACTTTTTATCACTTGATTCGTCTTCCATTTTGCAGACTTAACTGTACTGCAAAAACACAGTTCTGCACGTGGTGTTTTTGTGTGTGGTGCTTGTTACTTTTATTTCCTCACGTGTTTATGATGGTAACAACTGTGCTATCAGAAAGGAAGACAGCTTTTGTGTGTGTCCAGTGAAGGACTGGTGCAGCCTCCCTTGCATTTCCCCGTCATTGCAGAACCTTGTGAGCAGATAAGCTTTGGAAGTGTTGGAGCTGTGTGTGGGATGGATTCGTTAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004123-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=0.023 C2=0.593
Domain overlap (PFAM):
C1:
PF0065813=PABP=PU(27.8=62.5)
A:
PF0065813=PABP=FE(59.7=100)
C2:
PF0065813=PABP=PD(9.7=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGCTGTGCACATCCAA
R:
GCTTCAGAGTCACAAGGCACA
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]