BtaEX6066787 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016849 | PABPC1L
Description
poly(A) binding protein, cytoplasmic 1-like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr13:74064246-74066407:+
Coord C1 exon
chr13:74064246-74064339
Coord A exon
chr13:74065773-74065903
Coord C2 exon
chr13:74066330-74066407
Length
131 bp
Sequences
Splice sites
3' ss Seq
TCAGAGGCTGTTCTATACAGGTG
3' ss Score
4.4
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTCCAGGAGCCCGCTGTGCACGTCCCCGGACAGGAGCCCCTGACCGCGTCCATGCTGGCTGCAGCACCGCTGCACGAGCAGAAGCAGATGATCG
Seq A exon
GTGAGCGTCTCTTCCCCCTTGTCTACAACGTCCACGCCCACTTGGCCGGCAAGATCACGGGCATGCTGCTGGAGATTGACAACTCGGAGCTGCTGCTCATGCTGGAGTCCCCAGAGTCCCTCAACGCCAAG
Seq C2 exon
GTAGAAGAGGCTCTGGCAGTGCTGCAGGCCCACCAGGCCACGGAGCACATGCAAGGAGTGAACCTGTGCTGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016849-'14-16,'14-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.719 A=0.023 C2=0.087
Domain overlap (PFAM):
C1:
PF0065813=PABP=PU(27.8=62.5)
A:
PF0065813=PABP=FE(59.7=100)
C2:
PF0065813=PABP=PD(9.7=29.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGGAGCCCGCTGTG
R:
CTGGTCTCAGCACAGGTTCAC
Band lengths:
172-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]