BtaEX6066788 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016849 | PABPC1L
Description
poly(A) binding protein, cytoplasmic 1-like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr13:74063117-74065903:+
Coord C1 exon
chr13:74063117-74063223
Coord A exon
chr13:74064246-74064339
Coord C2 exon
chr13:74065773-74065903
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCGTGCCATGTGCAGGTC
3' ss Score
10.05
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CCAACATTGGTACCCAGACCACAGGACCCAGTATGACGGGATGCTCTACCCCTAGCAGGCCTCTCCTGACACACACATACTCCACGCCAGCACACCGCACTGACAGG
Seq A exon
GTCCAGGAGCCCGCTGTGCACGTCCCCGGACAGGAGCCCCTGACCGCGTCCATGCTGGCTGCAGCACCGCTGCACGAGCAGAAGCAGATGATCG
Seq C2 exon
GTGAGCGTCTCTTCCCCCTTGTCTACAACGTCCACGCCCACTTGGCCGGCAAGATCACGGGCATGCTGCTGGAGATTGACAACTCGGAGCTGCTGCTCATGCTGGAGTCCCCAGAGTCCCTCAACGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016849-'13-15,'13-12,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.719 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
PF0065813=PABP=PU(27.8=62.5)
C2:
PF0065813=PABP=FE(59.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCCAGTATGACGGGATG
R:
CAGCAGCTCCGAGTTGTCAAT
Band lengths:
180-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]