GgaEX6022857 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr20:5577737-5578817:-
Coord C1 exon
chr20:5578684-5578817
Coord A exon
chr20:5578307-5578400
Coord C2 exon
chr20:5577737-5577867
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTCTGTATTTCTTCACCCAGGTG
3' ss Score
8.95
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CCAACATAGGGACGCAGACGATCAGTGCCCGGGTGCCCTCCTCACCCACCCTGCGAGGCGCCCCGCAGTACAAGTACTCCCTGGCTGTGAGGAACATCCAGCCGATGGGCAGTGTGCCACCCGGGGCTCAGCAG
Seq A exon
GTGGGAGAACCTGCTGTGCACATCCAAGGGCAGGAGCCGCTGACGGCATCCATGCTTGCAGCAGCCCCTCCGCAGGAGCAGAAGCAAATGATAG
Seq C2 exon
GTGAGCGGCTCTACCCCCTGATCCATGCAATGCACGCCTCACTGGCTGGCAAGATCACAGGCATGCTGCTGGAGATCGACAATTCAGAGCTGCTGCTTCTGCTGGAGTCCCCTGAATCCTTGCACTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004123-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=0.547 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
PF0065813=PABP=PU(27.8=62.5)
C2:
PF0065813=PABP=FE(59.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCCTGGCTGTGAGGAAC
R:
ATTCAGGGGACTCCAGCAGAA
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]