HsaEX6078318 @ hg38
Exon Skipping
Gene
ENSG00000101104 | PABPC1L
Description
poly(A) binding protein cytoplasmic 1 like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr20:44935391-44959035:+
Coord C1 exon
chr20:44935391-44935497
Coord A exon
chr20:44936637-44936730
Coord C2 exon
chr20:44958337-44959035
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCCGGCACCATGCAGGTC
3' ss Score
5.24
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CCAACATTGGTACTCAGACCACAGGACCCAGTGGGGTAGGATGCTGTACACCAGGCCGGCCGCTCCTGCCGTGCAAATGTTCCTCAGCAGCACATAGCACCTATCGG
Seq A exon
GTCCAGGAGCCGGCTGTGCACATCCCAGGACAGGAGCCCCTGACCGCGTCCATGCTGGCTGCGGCGCCCCTGCATGAGCAAAAGCAGATGATTG
Seq C2 exon
GCCCAGAGACGGAAAGTACAAAGACTAGTAAAATACATCCTTGCCCTTAAGGAGCTAAGTACCCAAAACCTGTAATCCATCTTGAGTCACCAGAGTACGGTTGCTCAGAAACAGCAGTGGTGCGGTGGAAAGGGCATCAACCCTGCGATCCGGACAAGTCACTCCATCCCTCTGATCATGCGTGCCCACCTACCACATGAGGATATCACTTCATAGACTTGCTGGAAGGGTTCATTGTGTTAGCCTGTTCCCTGAGCTCTCTTCGTGATCAAGAAGACTGATCAGATAAATCAAGAGACTTGCCCAAAATTACCTAGGAAATCTGTAGCAGCAGCAGAACCAAACTCCGGTCCTTGCTAAATCTAGATACCAGGCTAGCTTTTCTATGGACCCAGAATTAACCCATACAAATGTACAAGCTTTTCCAGACCAGCTGGGGTGAGATGAATGAAAATGGCAGCAACATCAATACCTCAGCTTCTTCAGCAACTTCATCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101104_MULTIEX2-1/8=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.352 A=0.409 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0065813=PABP=PU(27.8=62.5)
C2:
PF0065813=PABP=PD(5.9=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTAGGATGCTGTACACCA
R:
TGAGCAACCGTACTCTGGTGA
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains