RnoEX6020193 @ rn6
Exon Skipping
Gene
ENSRNOG00000012750 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:RGD Symbol;Acc:1563142]
Coordinates
chr3:160442038-160444528:+
Coord C1 exon
chr3:160442038-160442144
Coord A exon
chr3:160443126-160443219
Coord C2 exon
chr3:160444398-160444528
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTACCTGGCACCATGTGCAGGTC
3' ss Score
5.71
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
TTAACATTGGTACCCAGACTACAGGACCAGGTGGGGAGGGATCCTGTATTCCAGGCCAGCCTCTTTTGGCACATAGAGGATCCTCCGCTGTACACAGTGCCCATGGG
Seq A exon
GTCCAGGAGTCGACCGTGTATGTCCCTGGCCATCAGCCTCTGACTGTGTCCATGCTGGATGCTGCACCCCTGCATGAGCAAAAGCAGATGATCG
Seq C2 exon
GGGAGCGTCTCTACTCCCTTATCCACGATGCCTGCGCCCCACTGACTGGCAAGATCACGGGCATGCTGCTGGAGATGGACAACCTGGAGCTTCTGTTATTGTTGGAGTCCCCAGAGTCCCTCCACGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012750-'10-13,'10-12,11-13=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=0.281 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0065813=PABP=PU(27.8=62.5)
C2:
PF0065813=PABP=FE(59.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCAGGCCAGCCTCTTTTG
R:
GGACTCTGGGGACTCCAACAA
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]