MmuEX1019351 @ mm10
Exon Skipping
Gene
ENSMUSG00000054582 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:MGI Symbol;Acc:MGI:1922908]
Coordinates
chr2:164045863-164050538:+
Coord C1 exon
chr2:164045863-164045969
Coord A exon
chr2:164047384-164047417
Coord C2 exon
chr2:164049977-164050538
Length
34 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCTTCCCTCTTCCAGAGC
3' ss Score
11.2
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TCAACATTGGTACCCAGACTACAGGACCAGGTGGGGAGGGATCCTCTATCCCAGGCCAGCTTCTCGTGCCACATAGAGGAACCTCAGCTGTACACAGTGCCCATGGG
Seq A exon
AGCCTTTCCTGGATGCTTGTGTTCACCCGCTAGG
Seq C2 exon
ATAGAAGAGGCGGTGGCAGTACTGCAGGTGCATCGAGAAATGGAGTCAACAGATAGGAACTGAACTCTGTGGGTTCCTGGGGATGGAAGGACCGACAGAGCGGCTGAGCTGCTGGCTCTCTGGAGACTCCGTAGAGAACCCAGCGATCAAAAACCCACTGTGATGTGTTGGTGGCTTTGTCTGAAGCACCAGGGAGTTTGGTGAAGCTAAAGGAGTCATAGGAGACTTGCAGTGGCTGGATGTTCTCACGCCTGGCTCCGTTCTGCCTGTCTGGAGGCCTGGTCTGCTGGTCCACCTTCTTGACTGAAGATTGGGTGTTTTCCATATTCTGGGAACATTTTTTTCCCTCCACTCCCCCTCCCCCCACCCCCACTGAAAATGGAATCTTCACTCCCTTGACTACTTGATTACTGCATTTCTGCTCTTGGTTCTAGCTGTGTGAACTCTAACTTCTTTCCTGATGGGGATCTCTGTGTTCTTGAGCTCTGATTATGTAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054582_MULTIEX1-1/4=C1-C2
Average complexity
ME(1-2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=0.000 C2=0.350
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0065813=PABP=PD(9.7=33.3)
Main Inclusion Isoform:
ENSMUST00000067715fB14144
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGCCACATAGAGGAACCT
R:
CCCAGGAACCCACAGAGTTCA
Band lengths:
125-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types