MmuEX0035441 @ mm10
Exon Skipping
Gene
ENSMUSG00000026785 | Pkn3
Description
protein kinase N3 [Source:MGI Symbol;Acc:MGI:2388285]
Coordinates
chr2:30082816-30083382:+
Coord C1 exon
chr2:30082816-30082962
Coord A exon
chr2:30083064-30083150
Coord C2 exon
chr2:30083239-30083382
Length
87 bp
Sequences
Splice sites
3' ss Seq
AGGTACTGGCTGTGTTGAAGGTT
3' ss Score
3.11
5' ss Seq
CGAGTAGGC
5' ss Score
3.1
Exon sequences
Seq C1 exon
GGACACTGCAGGTTCGCCTCCTGGGCTGCAAAGATCTGCTGGTAGCTGTGCCTGGACGGTCTCCCATGGCTGTCCTGGCAGGTAGCCCTTCTGAAAGCTGGCTCCGAACAAGGTCCCGGCAGCAGCGTGGTGGAGGCGAACTGGCCA
Seq A exon
GTTGACAATCGTGTTGTGGGCCAGACAGGATGGGGACTGGTGGCTGAGAAATCCTGGGACCAGAGTTTTATCATCTCCTTGGACCGA
Seq C2 exon
GCTCGCGAGCTGGAGATTGGGGTTCACTGGCGGGACTGGCGACAGTTGTGTGGTGTGGCGTTTCTGAAGCTTGAGGACTTCCTGGACAATGCCTGTCACCAGCTTTCTCTCAGTCTGGTGCCTCAGGGGCGGCTCTTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026785-'15-14,'15-13,16-14
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAAAGCTGGCTCCGAAC
R:
GGCACCAGACTGAGAGAAAGC
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types