GgaEX0006437 @ galGal4
Exon Skipping
Gene
ENSGALG00000004689 | PKN3
Description
protein kinase N3 [Source:HGNC Symbol;Acc:HGNC:17999]
Coordinates
chr17:5225446-5226611:+
Coord C1 exon
chr17:5225446-5225637
Coord A exon
chr17:5225883-5225992
Coord C2 exon
chr17:5226468-5226611
Length
110 bp
Sequences
Splice sites
3' ss Seq
CACATTTCTTCTTTGTCCAGATG
3' ss Score
8.17
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GAACGTTGGAAGTGAGACTGATGGGGTGTCAGGATCTATTGGAAAATGTTCCTGGCCGTTCCCGAATGGCTGGTTCTTCTCCTGTCTGCGGCAGCCCAAGTGACTTGAAGTCCTTTTCCCTAACAAGAGTTGGCCTGGGTATCCATGGCCGTAGCGTTGCAGGAAAGTACCTGCGAAATGAAGAGCTATGTA
Seq A exon
ATGAAGTCCTTGCTGTGCTCAAAGTGGACAATAAAGTCGTTGGCCAAACAAACTGGGGACCAGTAAATAACCAGGCATGGGACCAGAGCTTTGTAATTGAGCTAGACAGG
Seq C2 exon
TCTCGTGAACTCGAAATTTCAATTTACTGGAGAGACTGGAGAGAACTATGTGCAGTGAAGTTTTTACGTTTGGATGATTTCCTTGATAATGAACGCCACGGGATGTGCCTCATGCTTGAACCCCAAGGAATGCTTTTTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689_MULTIEX1-2/5=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCGAATGGCTGGTTCTT
R:
CACATCCCGTGGCGTTCATTA
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]