RnoEX0079828 @ rn6
Exon Skipping
Gene
ENSRNOG00000025892 | Set
Description
SET nuclear proto-oncogene [Source:RGD Symbol;Acc:1307467]
Coordinates
chr3:8646320-8650356:+
Coord C1 exon
chr3:8646320-8646503
Coord A exon
chr3:8648458-8648567
Coord C2 exon
chr3:8650281-8650356
Length
110 bp
Sequences
Splice sites
3' ss Seq
CGTAAGCCTTGGCACTGCAGGTG
3' ss Score
3.08
5' ss Seq
CGAGTAAGG
5' ss Score
6.93
Exon sequences
Seq C1 exon
GCTCAGGCCCAGCTCCAGGAATCCTCCCAGAAGCTGGACCTCCTACGGCTGGCCCTGGAATTGTTACTGGAGAGGTTGCCTCCCACCCACTCTCTTCGCAGCAGGGTGACCCGAGAACTGCGGATGGCCATGCTTGGGAACCCCCAGCCTCTGGGGACACTTGTGAAACCCATTGCCCTGACAG
Seq A exon
GTGAAGTACTGGCTGTGTTGAAGGTTGACAATCGTGTTGTGGGCCAGACAGGATGGGGACTGGTGGCTGAGAAATCCTGGGACCAGGCTTTTAGCATCTCCTTGGACCGA
Seq C2 exon
GTGACCTTCTGTGAGCCTGTCATTGAAAGGAGGCCGCGGCTGCAGAGACAGAGACGCGTTTTCTCTAAGCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025892_MULTIEX2-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.115
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(43.1=50.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGAATCCTCCCAGAAGC
R:
CCGCTTAGAGAAAACGCGTCT
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]