DreEX0055877 @ danRer10
Exon Skipping
Gene
ENSDARG00000079585 | pkn3
Description
protein kinase N3 [Source:ZFIN;Acc:ZDB-GENE-030131-1902]
Coordinates
chr5:31239109-31243262:-
Coord C1 exon
chr5:31243080-31243262
Coord A exon
chr5:31241437-31241546
Coord C2 exon
chr5:31239109-31239252
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTTTTGTCTCTCAGCTG
3' ss Score
9.3
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
Exon sequences
Seq C1 exon
GGCGATTGGAGGTCAGGTTGATGGGTTGTCAGGACCTGCTGGAGTCAGTTCCAGGCCGCTGTCGTGTAAGCAACATGTCCTCCGCTCCTGGAAGTCCATCTGACTCCAAATCACTAAGAATGAGAACCGGCCTTTCCACTCGCAGCACCAACGGCAAGACCACCAAGACTGATGAACTGTCAT
Seq A exon
CTGAAATCAGTGCTGTGTTGAAAGTGGATAACAAGATTGTTGGTCGCACACATTGGCGGCCGCTGAGTAAGGATGCCTGGAACCAAAGCTTTAGCATCGAACTGGAGCGG
Seq C2 exon
TCTCGAGAACTGGAGATTGCTGTGTATTGGCGAGACTGGAGGTCCCTGTGTGCCGTGAAGTTCCTGCGTTTGGAAGACTTTCTAGACAACCAGAGGCACGGCATGTGTCTTTATCTGGAGCCGCAGGGCACACTGTTCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079585-'12-10,'12-9,13-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAGCAACATGTCCTCCGC
R:
CCTGCGGCTCCAGATAAAGAC
Band lengths:
246-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]