BtaEX6046504 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010195 | PKN3
Description
Bos taurus protein kinase N3 (PKN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001205566]
Coordinates
chr11:99240168-99240765:+
Coord C1 exon
chr11:99240168-99240314
Coord A exon
chr11:99240401-99240510
Coord C2 exon
chr11:99240622-99240765
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCCCACCTCTGGCCTTGCAGGTG
3' ss Score
10.36
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GGACGCTGCAGGTCCGCCTCCTGGGCTGTGAGCAGCTGCTGATAGCGGTGCCTGGACGTTCCCCCGCGGCCGCGCTGGCCGGGAGCCCCTCCCAAGGCTGGCTTCGGAGCAGAGCCAAGCAGCAGCGTGGGGGAGGCGAGCTGGCCA
Seq A exon
GTGAGGTGCTGGCTGTGTTGAAGGTGGACAATCGCGTTGTGGGCCAGACAGGCTGGGGGCCTGTGGCCAAGCAGTCCTGGGACCAGAACTTTGTTATCGCCCTGGAGCGG
Seq C2 exon
GCCCGGGAGCTGGAGATCGGGGTCCACTGGCGGGACTGGAGGCAGCTGTGCGGCGTGGCCTTCCTGCGGCTGGAGGACTTCCTGGACAATGCCTGTCACCAGCTGTCCCTCAGCCTGGTGCCACAGGGACAGCTCTTCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010195-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCGGTGCCTGGACGTTC
R:
GAAGAGCTGTCCCTGTGGCA
Band lengths:
244-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]