RnoEX0079829 @ rn6
Exon Skipping
Gene
ENSRNOG00000025892 | Set
Description
SET nuclear proto-oncogene [Source:RGD Symbol;Acc:1307467]
Coordinates
chr3:8648458-8650356:+
Coord C1 exon
chr3:8648458-8648567
Coord A exon
chr3:8648678-8648821
Coord C2 exon
chr3:8650281-8650356
Length
144 bp
Sequences
Splice sites
3' ss Seq
GCCTGGTCTTTTCCACATAGGCT
3' ss Score
8.62
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
Exon sequences
Seq C1 exon
GTGAAGTACTGGCTGTGTTGAAGGTTGACAATCGTGTTGTGGGCCAGACAGGATGGGGACTGGTGGCTGAGAAATCCTGGGACCAGGCTTTTAGCATCTCCTTGGACCGA
Seq A exon
GCTCGTGAGCTGGAGATCGGGGTTCACTGGCGGGACTGGCGACAGTTGTGTGGTGTGGCATTCCTGAAGCTTGAGGAATTCCTTGACAATGCCTGTCACCAGCTTTCTCTCAGTCTGGTGCCGCAGGGACGGCTCTTTGCCCAG
Seq C2 exon
GTGACCTTCTGTGAGCCTGTCATTGAAAGGAGGCCGCGGCTGCAGAGACAGAGACGCGTTTTCTCTAAGCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025892_MULTIEX2-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTACTGGCTGTGTTGA
R:
CTCTCCGCTTAGAGAAAACGCG
Band lengths:
186-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]