HsaEX0047892 @ hg19
Exon Skipping
Gene
ENSG00000160447 | PKN3
Description
protein kinase N3 [Source:HGNC Symbol;Acc:17999]
Coordinates
chr9:131475557-131476400:+
Coord C1 exon
chr9:131475557-131475666
Coord A exon
chr9:131475778-131475921
Coord C2 exon
chr9:131476325-131476400
Length
144 bp
Sequences
Splice sites
3' ss Seq
GCCTGGCCTCCCCAATACAGGCC
3' ss Score
7.73
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
GCGAGGTGCTGGCTGTGCTAAAGGTGGACAACCGTGTTGTGGGGCAGACGGGCTGGGGGCAGGTGGCCGAACAGTCCTGGGACCAGACCTTTGTCATCCCACTGGAGCGA
Seq A exon
GCCCGTGAGCTGGAGATTGGGGTACACTGGCGGGACTGGCGGCAGCTATGTGGCGTGGCCTTCCTGAGACTTGAGGACTTCCTGGACAATGCCTGTCACCAACTGTCCCTCAGCCTGGTACCGCAGGGACTGCTTTTTGCCCAG
Seq C2 exon
GTGACCTTCTGCGATCCTGTCATTGAGAGGCGGCCCCGGCTGCAGAGGCAGGAACGCATCTTCTCTAAACGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160447-'7-10,'7-8,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGTGCTAAAGGTGGAC
R:
CTCTGCGTTTAGAGAAGATGCGT
Band lengths:
178-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)