GgaEX1044099 @ galGal4
Exon Skipping
Gene
ENSGALG00000004689 | PKN3
Description
protein kinase N3 [Source:HGNC Symbol;Acc:HGNC:17999]
Coordinates
chr17:5225883-5227620:+
Coord C1 exon
chr17:5225883-5225992
Coord A exon
chr17:5226468-5226611
Coord C2 exon
chr17:5227545-5227620
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCATCACCCATTTCCTCTAGTCT
3' ss Score
6.14
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
Exon sequences
Seq C1 exon
ATGAAGTCCTTGCTGTGCTCAAAGTGGACAATAAAGTCGTTGGCCAAACAAACTGGGGACCAGTAAATAACCAGGCATGGGACCAGAGCTTTGTAATTGAGCTAGACAGG
Seq A exon
TCTCGTGAACTCGAAATTTCAATTTACTGGAGAGACTGGAGAGAACTATGTGCAGTGAAGTTTTTACGTTTGGATGATTTCCTTGATAATGAACGCCACGGGATGTGCCTCATGCTTGAACCCCAAGGAATGCTTTTTGCAGAG
Seq C2 exon
GTGATGTTCTGTAATCCTGTCATTGAGAGAAAGCCAAAGCTGCAGAGACAGAAACGTATTTTCCCCAAGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689_MULTIEX1-3/5=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGTCCTTGCTGTGCTCA
R:
CTTTCTGCTTGGGGAAAATACGT
Band lengths:
186-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]