DreEX6011635 @ danRer10
Exon Skipping
Gene
ENSDARG00000079585 | pkn3
Description
protein kinase N3 [Source:ZFIN;Acc:ZDB-GENE-030131-1902]
Coordinates
chr5:31238876-31241546:-
Coord C1 exon
chr5:31241437-31241546
Coord A exon
chr5:31239109-31239252
Coord C2 exon
chr5:31238876-31238951
Length
144 bp
Sequences
Splice sites
3' ss Seq
CATAACTTTGGCTCCTGTAGTCT
3' ss Score
5.33
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTGAAATCAGTGCTGTGTTGAAAGTGGATAACAAGATTGTTGGTCGCACACATTGGCGGCCGCTGAGTAAGGATGCCTGGAACCAAAGCTTTAGCATCGAACTGGAGCGG
Seq A exon
TCTCGAGAACTGGAGATTGCTGTGTATTGGCGAGACTGGAGGTCCCTGTGTGCCGTGAAGTTCCTGCGTTTGGAAGACTTTCTAGACAACCAGAGGCACGGCATGTGTCTTTATCTGGAGCCGCAGGGCACACTGTTCACAGAG
Seq C2 exon
GTGAGATTCATCAATCCTGTCATTGAGCGGCATCCTAAACTACAACGACAGAAGAGGATTTTCCCTAAAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079585-'13-12,'13-10,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCAGTGCTGTGTTGAAAGTGG
R:
TCTTTAGGGAAAATCCTCTTCTGTCG
Band lengths:
178-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]