MmuEX0035442 @ mm10
Exon Skipping
Gene
ENSMUSG00000026785 | Pkn3
Description
protein kinase N3 [Source:MGI Symbol;Acc:MGI:2388285]
Coordinates
chr2:30081053-30084766:+
Coord C1 exon
chr2:30081053-30081236
Coord A exon
chr2:30083239-30083382
Coord C2 exon
chr2:30084691-30084766
Length
144 bp
Sequences
Splice sites
3' ss Seq
GCCTGATCTTTTCCACATAGGCT
3' ss Score
8.15
5' ss Seq
CAGGTTCCT
5' ss Score
0.18
Exon sequences
Seq C1 exon
GCCCAGGCCCAGCTCCAGGAATCCTCCCAGAAGCTGGACCTCCTACGGCTGGCCCTGGAATTGCTGCTGGAGAGGTTGCCTCCCACCCACTCTCTACGTAGCAGGGTGACCCAAGAACTTTGGATGGCAATGCTTGGGAACCCCCAACCTTTGGGGACACTTGTGAAACCTATTGCCTTGACAG
Seq A exon
GCTCGCGAGCTGGAGATTGGGGTTCACTGGCGGGACTGGCGACAGTTGTGTGGTGTGGCGTTTCTGAAGCTTGAGGACTTCCTGGACAATGCCTGTCACCAGCTTTCTCTCAGTCTGGTGCCTCAGGGGCGGCTCTTTGCCCAG
Seq C2 exon
GTCACCTTCTGCGAGCCTGTCATTGAAAGGAGGCCTCGGCTGCAGAGGCAGAGATGCATTTTCTCTAAGCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026785_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(43.1=50.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGAATCCTCCCAGAAGC
R:
CTCTCCGCTTAGAGAAAATGCA
Band lengths:
247-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types