BtaEX6046503 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010195 | PKN3
Description
Bos taurus protein kinase N3 (PKN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001205566]
Coordinates
chr11:99240401-99241267:+
Coord C1 exon
chr11:99240401-99240510
Coord A exon
chr11:99240622-99240765
Coord C2 exon
chr11:99241192-99241267
Length
144 bp
Sequences
Splice sites
3' ss Seq
AATTTGGCCTCCCTGTGTAGGCC
3' ss Score
7.98
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
GTGAGGTGCTGGCTGTGTTGAAGGTGGACAATCGCGTTGTGGGCCAGACAGGCTGGGGGCCTGTGGCCAAGCAGTCCTGGGACCAGAACTTTGTTATCGCCCTGGAGCGG
Seq A exon
GCCCGGGAGCTGGAGATCGGGGTCCACTGGCGGGACTGGAGGCAGCTGTGCGGCGTGGCCTTCCTGCGGCTGGAGGACTTCCTGGACAATGCCTGTCACCAGCTGTCCCTCAGCCTGGTGCCACAGGGACAGCTCTTCGCCCAG
Seq C2 exon
GTGACCTTCTGTGACCCTGTCATTGAGAGGAGGCCCCGACTGCAGAGGCAGAAACGCATTTTCTCAAAACGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010195-'13-13,'13-10,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCTGGCTGTGTTGAAG
R:
AAAATGCGTTTCTGCCTCTGC
Band lengths:
170-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]