GgaEX1044099 @ galGal3
Exon Skipping
Gene
ENSGALG00000004689 | PKN3
Description
NA
Coordinates
chr17:5853414-5855151:+
Coord C1 exon
chr17:5853414-5853523
Coord A exon
chr17:5853999-5854142
Coord C2 exon
chr17:5855076-5855151
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCATCACCCATTTCCTCTAGTCT
3' ss Score
6.14
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
Exon sequences
Seq C1 exon
ATGAAGTCCTTGCTGTGCTCAAAGTGGACAATAAAGTCGTTGGCCAAACAAACTGGGGACCAGTAAATAACCAGGCATGGGACCAGAGCTTTGTAATTGAGCTAGACAGG
Seq A exon
TCTCGTGAACTCGAAATTTCAATTTACTGGAGAGACTGGAGAGAACTATGTGCAGTGAAGTTTTTACGTTTGGATGATTTCCTTGATAATGAACGCCACGGGATGTGCCTCATGCTTGAACCCCAAGGAATGCTTTTTGCAGAG
Seq C2 exon
GTGATGTTCTGTAATCCTGTCATTGAGAGAAAGCCAAAGCTGCAGAGACAGAAACGTATTTTCCCCAAGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGTCCTTGCTGTGCTCA
R:
CTTTCTGCTTGGGGAAAATACGT
Band lengths:
186-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]