MmuEX0036894 @ mm9
Exon Skipping
Gene
ENSMUSG00000015474 | Ppt2
Description
palmitoyl-protein thioesterase 2 [Source:MGI Symbol;Acc:MGI:1860075]
Coordinates
chr17:34759976-34762876:-
Coord C1 exon
chr17:34762781-34762876
Coord A exon
chr17:34762582-34762689
Coord C2 exon
chr17:34759976-34760059
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCATGGCGGTTCTCTTTCAGACA
3' ss Score
6.74
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGGGCCTGGTGTGCCGTGCTTTGCTGTCTGTCATGGATAACCACAATGTGGACTCTTTCATCTCCCTCTCCTCCCCACAGATGGGCCAGTATGGAG
Seq A exon
ACACGGACTATTTGAAATGGCTCTTCCCCACGTCCATGCGGTCTAACCTCTATCGGGTCTGCTATAGTCCTTGGGGCCAGGAATTTTCCATTTGCAACTACTGGCACG
Seq C2 exon
ATCCTCACCACGATGACTTGTACCTCAATGCCAGCAGCTTTCTGGCCCTCATCAATGGGGAAAGAGACCATCCCAATGCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015474_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(12.1=100)
A:
PF0208910=Palm_thioest=FE(13.6=100)
C2:
PF0208910=Palm_thioest=FE(10.6=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCGTGCTTTGCTGTCT
R:
CAGTGGCATTGGGATGGTCTC
Band lengths:
170-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: