DreEX6072698 @ danRer10
Exon Skipping
Gene
ENSDARG00000104542 | ppt2
Description
palmitoyl-protein thioesterase 2 [Source:ZFIN;Acc:ZDB-GENE-010430-4]
Coordinates
chr19:19279704-19281388:-
Coord C1 exon
chr19:19281293-19281388
Coord A exon
chr19:19281024-19281131
Coord C2 exon
chr19:19279704-19279787
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTAATTTTGTCTGTTTGCAGACA
3' ss Score
10.3
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGGCTTGGTATGTCGAGGAATTCTGTCCACTCTCCCAGACCATAATGTACACTCTTTTATATCTCTGTCTGCTCCACAGGCAGGACAGTATGGAG
Seq A exon
ACACAGACTATTTGAAGTACCTGTTCCCTCAGTTTGTCAAATCCAACTTGTTTCATGTATGCTATACTGCAGTGGGCCAGAAAATATCAATCTGTAACTACTGGAATG
Seq C2 exon
ACCCTCATCACAGAGACATGTACATCAACAGCAGTGACTATCTGGCCTTACTAAACAATGAAAGACCAAATCCCAACTCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104542-'3-4,'3-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(12.1=100)
A:
PF0208910=Palm_thioest=FE(13.6=100)
C2:
PF0208910=Palm_thioest=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTTGGTATGTCGAGGAA
R:
CAGTAGAGTTGGGATTTGGTCT
Band lengths:
180-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]