MmuEX0036894 @ mm10
Exon Skipping
Gene
ENSMUSG00000015474 | Ppt2
Description
palmitoyl-protein thioesterase 2 [Source:MGI Symbol;Acc:MGI:1860075]
Coordinates
chr17:34623031-34625931:-
Coord C1 exon
chr17:34625836-34625931
Coord A exon
chr17:34625637-34625744
Coord C2 exon
chr17:34623031-34623114
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCATGGCGGTTCTCTTTCAGACA
3' ss Score
6.74
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGGGCCTGGTGTGCCGTGCTTTGCTGTCTGTCATGGATAACCACAATGTGGACTCTTTCATCTCCCTCTCCTCCCCACAGATGGGCCAGTATGGAG
Seq A exon
ACACGGACTATTTGAAATGGCTCTTCCCCACGTCCATGCGGTCTAACCTCTATCGGGTCTGCTATAGTCCTTGGGGCCAGGAATTTTCCATTTGCAACTACTGGCACG
Seq C2 exon
ATCCTCACCACGATGACTTGTACCTCAATGCCAGCAGCTTTCTGGCCCTCATCAATGGGGAAAGAGACCATCCCAATGCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015474_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(12.1=100)
A:
PF0208910=Palm_thioest=FE(13.6=100)
C2:
PF0208910=Palm_thioest=FE(10.6=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCGTGCTTTGCTGTCT
R:
CAGTGGCATTGGGATGGTCTC
Band lengths:
170-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types