RnoEX0069233 @ rn6
Exon Skipping
Gene
ENSRNOG00000000435 | Ppt2
Description
palmitoyl-protein thioesterase 2 [Source:RGD Symbol;Acc:620375]
Coordinates
chr20:4387267-4389124:-
Coord C1 exon
chr20:4389029-4389124
Coord A exon
chr20:4388833-4388940
Coord C2 exon
chr20:4387267-4387350
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTCTCTTCTTCTTAGACA
3' ss Score
8.77
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GAGGCCTGGTGTGCCGCGCATTGCTGTCTGTCATGGATGAGCACAATGTGGATTCCTTCATCTCCCTTTCTTCTCCACAGATGGGACAGTATGGAG
Seq A exon
ACACGGACTATTTGAAGTGGCTGTTCCCTACGTCCATGCGGTCTAACCTCTATCGGATCTGCTATAGCCCCTGGGGCCAGGAATTTTCCATTTGCAACTACTGGCACG
Seq C2 exon
ACCCTCACCACGATGACTTGTACCTCAACGCCAGCAGCTTTCTGGCCCTCATCAATGGGGAGAGAGACCATCCGAATGCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000435-'15-22,'15-21,18-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(11.8=100)
A:
PF0208910=Palm_thioest=FE(13.3=100)
C2:
PF0208910=Palm_thioest=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGTGCCGCGCATTG
R:
TGGCATTCGGATGGTCTCTCT
Band lengths:
172-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]