BtaEX0028322 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004436 | PPT2
Description
Bos taurus palmitoyl-protein thioesterase 2 (PPT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035318]
Coordinates
chr23:27033250-27034403:-
Coord C1 exon
chr23:27034308-27034403
Coord A exon
chr23:27034111-27034218
Coord C2 exon
chr23:27033250-27033333
Length
108 bp
Sequences
Splice sites
3' ss Seq
CACTGCTGTTCTTTTGCCAGACA
3' ss Score
7.07
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGGGCCTGGTGTGCCGGGCACTCCTGTCTGTGATGGATGAACACAATGTGGATTCTTTCATCTCTCTCTCCTCTCCACAGATGGGACAGTATGGAG
Seq A exon
ACACAAACTATTTGAAGTGGCTGTTCCCCACCTCCATGAGGTCTAACCTCTACCGGATCTGCTACAGCCCGTGGGGCCAGGAATTCTCCATCTGCAACTACTGGCATG
Seq C2 exon
ACCCTCACCATGATGACTTGTACCTCAATGCCAGCAGCTTCCTGGCCCTGATCAATGGGGAAAGAGACCATCCCAATGCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004436_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(12.0=100)
A:
PF0208910=Palm_thioest=FE(13.5=100)
C2:
PF0208910=Palm_thioest=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTCCTGTCTGTGATGGA
R:
CAGTGGCATTGGGATGGTCTC
Band lengths:
164-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development