MmuEX0041262 @ mm9
Exon Skipping
Gene
ENSMUSG00000075318 | Scn2a1
Description
sodium channel, voltage-gated, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:98248]
Coordinates
chr2:65573666-65586488:+
Coord C1 exon
chr2:65573666-65573947
Coord A exon
chr2:65581122-65581175
Coord C2 exon
chr2:65586351-65586488
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATATGTTGATTGTTTTACAGGCC
3' ss Score
8.24
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTTGTTGTAAACGCTCTCCTAGGTGCAATCCCATCCATAATGAACGTACTTCTGGTCTGCCTGATCTTTTGGCTAATATTCAGTATCATGGGGGTGAATCTCTTTGCCGGCAAGTTCTATCATTGCATCAACTACACCACCGGGGAAATGTTTGATGTGAGCGTGGTCAACAACTACAGTGAGTGCCAGGCTCTCATAGAGAGCAATCAGACAGCCAGGTGGAAGAATGTGAAAGTCAACTTTGACAACGTGGGACTTGGATATCTTTCTCTGCTTCAAGTA
Seq A exon
GCCACATTTAAAGGATGGATGGATATCATGTATGCAGCTGTTGACTCAAGAAAT
Seq C2 exon
GTAGAACTGCAACCCAAATATGAAGACAATCTATACATGTACCTTTACTTTGTCATCTTTATTATTTTCGGCTCATTCTTCACACTGAACCTGTTCATCGGCGTCATCATAGATAACTTCAACCAACAGAAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075318-'28-29,'28-28,29-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(40.6=100)
A:
PF0052026=Ion_trans=FE(7.4=100)
C2:
PF0052026=Ion_trans=PD(15.3=76.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACAACGTGGGACTTGGAT
R:
ATGACGCCGATGAACAGGTTC
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: