BtaEX6009421 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038180 | SCN2A
Description
sodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
Coordinates
chr2:30992122-30996427:-
Coord C1 exon
chr2:30996146-30996427
Coord A exon
chr2:30994829-30994882
Coord C2 exon
chr2:30992122-30992259
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATGGTGTGACTTTTTTTCAGGCC
3' ss Score
7.82
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTCGTTGTCAATGCTCTTTTAGGAGCCATTCCATCCATAATGAATGTACTTCTGGTTTGCCTGATCTTTTGGTTGATATTCAGTATCATGGGAGTGAATCTTTTTGCTGGCAAGTTTTACCACTGTATTAACTACACCACTGGAGAAATGTTTGATGTCAGCGTGGTCAACAATTACAGCGAATGTAAGGCCCTCATAGATAGCAACCAAACTGCCCGGTGGAAGAACGTGAAAGTCAACTTTGATAATGTGGGACTTGGGTATCTTTCTCTGCTTCAAGTA
Seq A exon
GCCACATTTAAAGGATGGATGGATATCATGTATGCAGCAGTTGATTCACGAAAT
Seq C2 exon
GTAGAATTACAACCCAAGTATGAAGACAATCTGTACATGTATCTGTATTTTGTCATCTTTATTATTTTTGGTTCATTCTTTACTCTAAATCTTTTCATTGGTGTCATCATAGATAACTTCAACCAGCAGAAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038180-'26-25,'26-24,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(40.6=100)
A:
PF0052026=Ion_trans=FE(7.4=100)
C2:
PF0052026=Ion_trans=PD(15.3=76.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGAATGTAAGGCCCTCAT
R:
ACAGATTGTCTTCATACTTGGGTTGT
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]