MmuEX0041603 @ mm9
Exon Skipping
Gene
ENSMUSG00000026121 | Sema4c
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:MGI Symbol;Acc:MGI:109252]
Coordinates
chr1:36610316-36610833:-
Coord C1 exon
chr1:36610771-36610833
Coord A exon
chr1:36610561-36610659
Coord C2 exon
chr1:36610316-36610412
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTATACCTTTCTCTCCAAAGACC
3' ss Score
7.6
5' ss Seq
ATCGTGAGT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATCTCTTGGGAGGCTCCAGCTGAGAAGAAAATTGAATGTACCCAGAAAGGGAAGAGCAACCAG
Seq A exon
ACCGAATGCTTCAACTTCATCCGCTTCCTTCAGCCATACAATTCCTCCCATCTGTATGTCTGCGGCACCTATGCCTTCCAGCCCAAGTGCACCTACATC
Seq C2 exon
AACATGCTCACGTTCACCTTGGACCGTGCAGAATTTGAGGATGGGAAGGGTAAATGCCCATATGACCCAGCTAAGGGTCACACCGGACTCCTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026121_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.7=100)
A:
PF0140314=Sema=FE(7.5=100)
C2:
PF0140314=Sema=FE(7.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTTGGGAGGCTCCAGC
R:
CACAAGGAGTCCGGTGTGAC
Band lengths:
159-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: