RnoEX0079320 @ rn6
Exon Skipping
Gene
ENSRNOG00000016254 | Sema4c
Description
semaphorin 4C [Source:RGD Symbol;Acc:1562837]
Coordinates
chr9:43134268-43134738:-
Coord C1 exon
chr9:43134676-43134738
Coord A exon
chr9:43134474-43134572
Coord C2 exon
chr9:43134268-43134364
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATACCTTTCTCTCCTTGAAGACC
3' ss Score
8.34
5' ss Seq
ATCGTGAGT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATCTCCTGGGAGGCTCCAGCTGAGAAGAAAATTGAGTGTACCCAGAAAGGGAAGAGCAACCAG
Seq A exon
ACCGAGTGCTTCAACTTCATCCGCTTCCTTCAGCCATACAACGCCTCCCATCTGTACGTTTGTGGTACCTATGCCTTCCAGCCCAAGTGCACCTACATC
Seq C2 exon
AACATGCTCACGTTCACCTTGGATCGTGCAGAATTTGAGGACGGGAAGGGTAAATGCCCTTACGACCCAGCTAAGGGCCACACTGGACTCCTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016254-'18-10,'18-9,19-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.7=100)
A:
PF0140314=Sema=FE(7.5=100)
C2:
PF0140314=Sema=FE(7.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCTGGGAGGCTCCA
R:
CACAAGGAGTCCAGTGTGGC
Band lengths:
159-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]