GgaEX1051662 @ galGal4
Exon Skipping
Gene
ENSGALG00000026957 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr6:22630686-22631489:-
Coord C1 exon
chr6:22631427-22631489
Coord A exon
chr6:22631257-22631355
Coord C2 exon
chr6:22630686-22630779
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTGCATCCTGTCCACCACAGACC
3' ss Score
8.18
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
ATCCATTGGGAAGCATCTCCAGAGAAGCAGCTGGACTGCCTGCAGAAGGGCAAGAACAACAAG
Seq A exon
ACCGAGTGCTTCAACCACGTGCGGTTCCTGCAGAGGCTGAACACCACGCACCTCTACGCCTGTGGCACCTATGCCTTCCACCCGCTCTGCGCTTCCATT
Seq C2 exon
GATGCTGACAGGTTCACACTGCCCTCCCGCTTCGAGGAAGGCAAAGAGAAGTGCCCCTACGACCCCTCCCGCGGCTACACCGGCCTCATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026957-'2-8,'2-2,3-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.6=100)
A:
PF0140314=Sema=FE(7.4=100)
C2:
PF0140314=Sema=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTGGGAAGCATCTCCAGA
R:
CCACAATGAGGCCGGTGTAG
Band lengths:
156-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]