DreEX0065106 @ danRer10
Exon Skipping
Gene
ENSDARG00000076595 | sema4ga
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ga [Source:ZFIN;Acc:ZDB-GENE-060503-381]
Coordinates
chr13:9394034-9395895:+
Coord C1 exon
chr13:9394034-9394096
Coord A exon
chr13:9394170-9394268
Coord C2 exon
chr13:9395802-9395895
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGATTTCCTCACTCTTACAGACG
3' ss Score
7.39
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ATTGACTGGGAGGCATCAGACGATCAGATGCAACAATGCTGGAACAAAGGGAAAGATAACCAG
Seq A exon
ACGGAGTGTTTCAACCACATTCGCTTCCTGCAGAGGTTCAACAGCACACACTTGTACACGTGCGGCACACATGCTTTCAGCCCTCTGTGTGCATACATT
Seq C2 exon
GATGGAAGGGAGTTTAAAATCTCATCAGTCTTTGAAGAGGGTCGAGAGAAATGTCCATATGACCCCTCAAAAGGCTACACTGGCCTGCTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076595-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.4=100)
A:
PF0140314=Sema=FE(7.1=100)
C2:
PF0140314=Sema=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGGCATCAGACGATCAG
R:
CAATTAGCAGGCCAGTGTAGC
Band lengths:
151-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]