RnoEX0079346 @ rn6
Exon Skipping
Gene
ENSRNOG00000014650 | Sema4g
Description
semaphorin 4G [Source:RGD Symbol;Acc:1310436]
Coordinates
chr1:264742869-264746298:+
Coord C1 exon
chr1:264742869-264742931
Coord A exon
chr1:264745994-264746092
Coord C2 exon
chr1:264746205-264746298
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCCCTCTGTCTGTAGACG
3' ss Score
11.04
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
ATCCACTGGGAGGCCTCCCCAGAGATGCAAAGCAAGTGTCATCAGAAAGGGAAAAACAACCAG
Seq A exon
ACGGAGTGTTTCAACCATGTGCGATTTCTACAGCGGCTCAATGCCTCCCACTTCTATGCATGTGGGACCCACGCCTTCCAGCCCCTCTGTGCAGCCATT
Seq C2 exon
GATGCTGAGGCCTTCATCTTGCCTACTAGCTTCGAGGAGGGAAAGGAGAAATGTCCTTACGACCCAGCCCGTGGCTTCACGGGCCTTATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014650-'6-10,'6-7,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.635 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(27.8=100)
A:
PF0140314=Sema=FE(7.4=100)
C2:
PF0140314=Sema=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCAGAGATGCAAAGCAA
R:
CAATGATAAGGCCCGTGAAGC
Band lengths:
143-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]