MmuEX6033164 @ mm9
Exon Skipping
Gene
ENSMUSG00000025207 | Sema4g
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:MGI Symbol;Acc:MGI:1347047]
Coordinates
chr19:45067610-45071263:+
Coord C1 exon
chr19:45067610-45067672
Coord A exon
chr19:45070959-45071057
Coord C2 exon
chr19:45071170-45071263
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCCCTCTGTCTGTAGACC
3' ss Score
11.69
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
ATCCACTGGGAGGCCTCCCCAGAGATGCAAAGCAAGTGTCATCAGAAAGGGAAAAACAACCAG
Seq A exon
ACCGAGTGTTTCAACCACGTGCGATTTCTACAGCGGCTCAATGCCACCCACTTCTATGCATGTGGGACCCACGCCTTCCAGCCCCTCTGTGCAGCTATT
Seq C2 exon
GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025207-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.6=100)
A:
PF0140314=Sema=FE(7.4=100)
C2:
PF0140314=Sema=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCAGAGATGCAAAGCAA
R:
CAATGATAAGGCCTGTGAAGC
Band lengths:
143-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: