HsaEX6090029 @ hg19
Exon Skipping
Gene
ENSG00000095539 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:10735]
Coordinates
chr10:102733304-102738145:+
Coord C1 exon
chr10:102733304-102733366
Coord A exon
chr10:102737389-102737487
Coord C2 exon
chr10:102738052-102738145
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCTCCACCTCATCCCACAGACG
3' ss Score
9.96
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
ATCCACTGGGAAGCCTCCCCAGAGATGCAAAGCAAATGTCATCAAAAAGGGAAAAACAACCAG
Seq A exon
ACGGAGTGCTTTAACCATGTGCGGTTCCTGCAGCGGCTCAATTCTACCCACCTCTATGCATGTGGGACTCACGCCTTCCAGCCCCTCTGTGCAGCCATT
Seq C2 exon
GATGCTGAGGCCTTCACCTTGCCAACCAGCTTCGAGGAGGGGAAGGAGAAGTGTCCTTATGACCCAGCCCGTGGCTTCACAGGCCTCATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539-'5-10,'5-9,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.639 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.4=100)
A:
PF0140314=Sema=FE(27.8=100)
C2:
PF0140314=Sema=PD(20.9=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCAGAGATGCAAAGCAA
R:
CAATGATGAGGCCTGTGAAGC
Band lengths:
143-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)