BtaEX0031874 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021920 | SEMA4C
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:HGNC Symbol;Acc:HGNC:10731]
Coordinates
chr11:2788953-2789892:-
Coord C1 exon
chr11:2789744-2789892
Coord A exon
chr11:2789124-2789222
Coord C2 exon
chr11:2788953-2789049
Length
99 bp
Sequences
Splice sites
3' ss Seq
CAGATGCCTCTCTGTCCCAGACG
3' ss Score
6.54
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
AGCTGGCCACGGTGGTGCGGCGCTTCTCCCAGACGGGCATCCAGGACTTCCTGACGCTGACCCTGACTGAGCAGACGGGGCTCCTGTACGTCGGGGCCCGGGAGGCCCTGTTTGCCTTCAGCGTGGAGGCTCTGGAGCTGCAGGGAGTG
Seq A exon
ACGGAGTGTTTCAATTTCATCCGCTTCCTGCAGCCATATAACACATCCCACCTGTACGTGTGCGGTACCTATGCCTTCCAGCCCAAGTGCACCTACATT
Seq C2 exon
GACATGCTCACCTTCACCCTGGAGCGGAGTGAGTTTGAGGATGGCAAGGGCAAGTGCCCCTATGACCCGGCCAAGGGCCACACCGGCCTCCTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021920_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.7=66.0)
A:
PF0140314=Sema=FE(7.5=100)
C2:
PF0140314=Sema=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGGCATCCAGGACTTC
R:
CTTGCCCTTGCCATCCTCAAA
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development