BtaEX0031873 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021920 | SEMA4C
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:HGNC Symbol;Acc:HGNC:10731]
Coordinates
chr11:2789124-2789892:-
Coord C1 exon
chr11:2789744-2789892
Coord A exon
chr11:2789357-2789419
Coord C2 exon
chr11:2789124-2789222
Length
63 bp
Sequences
Splice sites
3' ss Seq
CATTCCCTCCCTGTCCTCAGATC
3' ss Score
11.54
5' ss Seq
CAGGTCGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
AGCTGGCCACGGTGGTGCGGCGCTTCTCCCAGACGGGCATCCAGGACTTCCTGACGCTGACCCTGACTGAGCAGACGGGGCTCCTGTACGTCGGGGCCCGGGAGGCCCTGTTTGCCTTCAGCGTGGAGGCTCTGGAGCTGCAGGGAGTG
Seq A exon
ATCTCATGGGAGGCGCCAGTGGAGAAGAAGGCTGAGTGTATCCAGAAAGGGAAGAGTAACCAG
Seq C2 exon
ACGGAGTGTTTCAATTTCATCCGCTTCCTGCAGCCATATAACACATCCCACCTGTACGTGTGCGGTACCTATGCCTTCCAGCCCAAGTGCACCTACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021920_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.7=66.0)
A:
PF0140314=Sema=FE(4.7=100)
C2:
PF0140314=Sema=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGCGTGGAGGCTCTG
R:
AATGTAGGTGCACTTGGGCTG
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development