DreEX0065092 @ danRer10
Exon Skipping
Gene
ENSDARG00000079611 | sema4c
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:ZFIN;Acc:ZDB-GENE-080303-16]
Coordinates
chr5:14060761-14064661:-
Coord C1 exon
chr5:14064554-14064661
Coord A exon
chr5:14060997-14061059
Coord C2 exon
chr5:14060761-14060859
Length
63 bp
Sequences
Splice sites
3' ss Seq
CATGTCTCTTTCTCTCTTAGATT
3' ss Score
11.95
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
TACACCATGTTGACCCTGGCAGAACACGAGAGGGTTTTGTATGTGGGCGCCAGAGAGAACATCTTCGCCCTGGATCCCAACGACATCAGCAGACAGCTCCGACCACAG
Seq A exon
ATTGAGTGGTCTGCTCCTGCAGAAAAGAAAAAAGAGTGTGCAGCGAAGGGGAAGAATAACCAG
Seq C2 exon
ACTGAGTGCTTCAACTACATTCGCTTCCTGCAGAGCTACAATCACACGCACCTGTATACATGCGGGACGTACGCCTTCCAGCCCAAATGCACCTACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079611-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(8.1=67.3)
A:
PF0140314=Sema=FE(4.7=100)
C2:
PF0140314=Sema=FE(7.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCCAACGACATCAGCAG
R:
ATGTAGGTGCATTTGGGCTGG
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]