MmuEX7000110 @ mm10
Exon Skipping
Gene
ENSMUSG00000026121 | Sema4c
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:MGI Symbol;Acc:MGI:109252]
Coordinates
chr1:36553716-36554400:-
Coord C1 exon
chr1:36554252-36554400
Coord A exon
chr1:36553926-36553988
Coord C2 exon
chr1:36553716-36553814
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTGTCCAATCCTCAGATC
3' ss Score
9.11
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGCTGGTCACAGTAGTGAGGCGGTTCTCCCAGACAGGCATCCAGGACTTCCTGACACTGACCCTGACAGAACATTCTGGCCTTTTATATGTGGGGGCCCGAGAGGCGCTGTTTGCCTTCAGTGTAGAGGCTCTGGAGCTGCAAGGAGCG
Seq A exon
ATCTCTTGGGAGGCTCCAGCTGAGAAGAAAATTGAATGTACCCAGAAAGGGAAGAGCAACCAG
Seq C2 exon
ACCGAATGCTTCAACTTCATCCGCTTCCTTCAGCCATACAATTCCTCCCATCTGTATGTCTGCGGCACCTATGCCTTCCAGCCCAAGTGCACCTACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026121-'9-11,'9-10,11-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.7=66.0)
A:
PF0140314=Sema=FE(4.7=100)
C2:
PF0140314=Sema=FE(7.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTTATATGTGGGGGCCC
R:
TAGGTGCCGCAGACATACAGA
Band lengths:
142-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types