RnoEX0079319 @ rn6
Exon Skipping
Gene
ENSRNOG00000016254 | Sema4c
Description
semaphorin 4C [Source:RGD Symbol;Acc:1562837]
Coordinates
chr9:43134474-43134986:-
Coord C1 exon
chr9:43134886-43134986
Coord A exon
chr9:43134676-43134738
Coord C2 exon
chr9:43134474-43134572
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATGTCCTGTCCCATCCTCAGATC
3' ss Score
10.33
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGGCAGTGGGAGGCACTCAGAAGGGAGAGGGAAAGGACTCAGGGTGTGTGTGAACTGTGCGGGCTGGCCCTCAGCCTAGAGGTCTCTCTGGGGGGTGTCAG
Seq A exon
ATCTCCTGGGAGGCTCCAGCTGAGAAGAAAATTGAGTGTACCCAGAAAGGGAAGAGCAACCAG
Seq C2 exon
ACCGAGTGCTTCAACTTCATCCGCTTCCTTCAGCCATACAACGCCTCCCATCTGTACGTTTGTGGTACCTATGCCTTCCAGCCCAAGTGCACCTACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016254-'17-9,'17-8,18-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0140314=Sema=FE(4.7=100)
C2:
PF0140314=Sema=FE(7.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCAGAAGGGAGAGGGAA
R:
GGCGTTGTATGGCTGAAGGAA
Band lengths:
134-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]