DreEX6009691 @ danRer10
Exon Skipping
Gene
ENSDARG00000079611 | sema4c
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:ZFIN;Acc:ZDB-GENE-080303-16]
Coordinates
chr5:14054270-14061059:-
Coord C1 exon
chr5:14060997-14061059
Coord A exon
chr5:14060761-14060859
Coord C2 exon
chr5:14054270-14054366
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTCGTCGACGTCTTTGCAGACT
3' ss Score
7.82
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
ATTGAGTGGTCTGCTCCTGCAGAAAAGAAAAAAGAGTGTGCAGCGAAGGGGAAGAATAACCAG
Seq A exon
ACTGAGTGCTTCAACTACATTCGCTTCCTGCAGAGCTACAATCACACGCACCTGTATACATGCGGGACGTACGCCTTCCAGCCCAAATGCACCTACATT
Seq C2 exon
AATGCAGATCATTTCACTCTGGATAGCGCCGCCCTGGAGGACGGCAAGGGAAAGTGCCCTTACGACCCCGCCAAAGGTCATACAGGCCTCATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079611-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.7=100)
A:
PF0140314=Sema=FE(7.4=100)
C2:
PF0140314=Sema=FE(7.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAGTGGTCTGCTCCTGC
R:
CCACAATGAGGCCTGTATGACC
Band lengths:
160-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]