MmuEX0045058 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48399105-48399978:+
Coord C1 exon
chr6:48399105-48399187
Coord A exon
chr6:48399364-48399543
Coord C2 exon
chr6:48399734-48399978
Length
180 bp
Sequences
Splice sites
3' ss Seq
CCCATTCTTTTCTACCACAGCCC
3' ss Score
8.5
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACCCCCGGAAACCAGGCCTGCTACTTGGAACCGGACAGTGAGGGCTTGTTGTCCAGGATGGGGGGGAGCTCACTGTACCGATG
Seq A exon
CCCTTGCTGAAACCAGCCCTAAAGGTCATTGCTTTGTCACATGGCATTGCCAACCTCTAGCAGGCTCAGCTAACTCTTCGGCAGGAAGCCTAGAGGAATGCTGTGCCCAACCCTGGGGACACAGCTGGTGGAACAGCAGCTCCCAGATGTGCCTCAGCTGTTCTGGTCAGCACCGCCCAG
Seq C2 exon
GCAATGCTTCCTCTGAAGGCCTCCTGCAGCCTCTGGCAGGAGCTGTAGGCCAGCTCTGGAGCCAGCGCCAGCGTCCCTCAGCCACCTGTGCCACCTGGTCTGGCTTCCACTACCAAACTTTTGACGGACATCACTACCACTTCCTGGGCCAGTGTACCTACTTGCTAGCTGGTGCTATGGATTCCACCTGGGCTGTCCACCTCAGGCCTAGTGTCCACTGTCCCCAGCATAGACACTGCTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'2-3,'2-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009420=VWD=PU(35.1=63.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTTGGAACCGGACAGTG
R:
GGTGGAATCCATAGCACCAGC
Band lengths:
252-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: