DreEX6096631 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40140448-40142364:+
Coord C1 exon
chr24:40140448-40140530
Coord A exon
chr24:40141415-40141585
Coord C2 exon
chr24:40142141-40142364
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTGTGCGTGTGTGTGTACAGGTG
3' ss Score
9.45
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
ACCTCCTGACATCGAGACAGAGGTGGTGAACCGGACAGTCAGGCAGTGTTGTGAAGGCTGGACTGGACCACACTGCACACAGG
Seq A exon
GTGTGAGTGTTCGCGGTCAGTGTTTCTCCACCTGGACGTGTGAGGAGTTTCCGGGGGTCCAGAACTCGTCTCTGATGGCGCTGGAGCAGTGCTGCGGTCACCTGTGGGCTCTGAGCTGGAGGAACGCCTCCGACCACACCTGTCTGTCCTGCACATACACACTCCTGCCAG
Seq C2 exon
ATGTGGGTTCGTCCCCAGTGGTCCGCGGTGGGCTGTTACGGGGTGTCCGTGACCCGCAGGCCTCCTCCACCTGTATGAGCTGGAGCGGGACACACTTCCGCACCTTCGACCGCAAACACTTCCACTTCCAGGGCAGCTGCACGTACCTGCTGGCTTCATCCACTGACGGGACGTGGGCTGTGTACATCAGCACAGTGTGTGAGACCAGCGGACGCTGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009420=VWD=PU(34.0=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGTCAGGCAGTGTTGTG
R:
CTGTGCTGATGTACACAGCCC
Band lengths:
246-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]