GgaEX7001571 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:408075-408691:+
Coord C1 exon
chr2:408075-408157
Coord A exon
chr2:408250-408420
Coord C2 exon
chr2:408492-408691
Length
171 bp
Sequences
Splice sites
3' ss Seq
GCTGCATCCCTGTGCCACAGTGG
3' ss Score
4.2
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
Exon sequences
Seq C1 exon
ACCCCCGGAGACGCAGCTGGTGGTGCGGAACCGCACGGTGCGTGCCTGTTGTGCCGGCTGGAGTGGGCTGCACTGCACAGAAG
Seq A exon
TGGAGGGCTCGCTGGGACAATGCCATGCCAGCTGGCAGTGCCAGGACGCAGTGGGTGCCCACAACCTCTCCACCGTGAGCATGGCCGAGTGCTGCCGCCAGCCCTGGGGGCACAGCTGGAGGAACGGCTCCTCTGCGCTCTGCTTCGCCTGCAGCCGGCAGCCCCTCACCG
Seq C2 exon
GCGATGTACCCCTGCCCACAGCACCGCGGGGTCCTGCCGCCCGGCACCGCGGTCCCACTGCCAGCTGCACCGTATGGGCCGGATCCCGGTACCGCAGCTTCGATGGGCGGCACTTTGGCTTCCAGGGCGAGTGTGCCTACAGCCTGGCCGCCTCCACTGACAGCACCTGGGCTGTCAGCATCACCCCAGGCAGCCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'3-4,'3-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009420=VWD=PU(31.2=65.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACGCAGCTGGTGGTG
R:
GATGCTGACAGCCCAGGTG
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]