MmuEX0045069 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48446135-48447582:+
Coord C1 exon
chr6:48446135-48446262
Coord A exon
chr6:48446379-48446521
Coord C2 exon
chr6:48447374-48447582
Length
143 bp
Sequences
Splice sites
3' ss Seq
ACTGAAGCTATCTGCCTCAGCTG
3' ss Score
0.68
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
AGTGCCCACCTGGGCAGGTGCTCAGTACCTGTGCCACTATGTGCCCGAGCCTTTGCTCCCACTTGTGGCCTGGCACCATCTGTGTGCGGGAACCCTGCCAGCTTGGCTGTGGCTGCCCTGGGGGACAG
Seq A exon
CTGCTATACAACGGCACGTGCATTCCCCCTGAGGCCTGTCCCTGCACCCAGTTTTCCCTACCCTGGGGCCTCACCCTACCCTTGGAAGAGCAGGCCCGGGAGCTGCCCTCAGGGACTGTGCTCACTCGGAACTGCACACACTG
Seq C2 exon
AGTGCGCTCCTGGGGAAATATGGCAGCATGGGAAGCTGGGGCCTTGCGAGAAGACATGCCCGGAAATGAACATGACACAGGCTTGGAGCAACTGCACTGAGGCACAGGCTCCAGGCTGTGTGTGTCAGCTGGGGTACTTCCGCAGCCAGACAGGTCTCTGTGTTCCCGAAGACCACTGTGAATGTTGGCACCATGGGAGTCCCCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797_MULTIEX4-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(74.5=95.3)
A:
PF0182612=TIL=PD(21.8=25.0)
C2:
PF0182612=TIL=WD(100=84.3),PF0009313=VWC=PU(14.3=11.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTGTGCCACTATGTGCC
R:
AAGTACCCCAGCTGACACACA
Band lengths:
243-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: