RnoEX6013446 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78129017-78129537:+
Coord C1 exon
chr4:78129017-78129144
Coord A exon
chr4:78129252-78129394
Coord C2 exon
chr4:78129491-78129537
Length
143 bp
Sequences
Splice sites
3' ss Seq
ACTGAACCTATCTGCCTCAGCTG
3' ss Score
3.31
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
AGTGCCCGCCTGGGCAGGTGCTCAGTACCTGTGCCACTTTGTGCCCCAGCTTCTGCTCCCACTTGTGGCCTGGCACCATCTGTGTGCGGGAACCCTGCCAGCTTGGCTGTGGCTGCCCTGGGGGACAG
Seq A exon
CTGCTACACAGTGGCACATGCATTCCCCCTGAGGCCTGTCCCTGCACCCGGCTTTCCCTGCCCTGGGGCCTCACCCTACCCTTGGAAGAGCAGGCCCAGGAGCTGCCCTCAGGGACTGTGCTCACCTGGAACTGCACACACTG
Seq C2 exon
CACCTGTCAAGGAGGAGTCTTCACCTGCTCCCATACGGACTGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'101-106,'101-105,102-106=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(74.5=95.3)
A:
PF0182612=TIL=PD(21.8=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGGTGCTCAGTACC
R:
CCTGACAGTCCGTATGGGA
Band lengths:
164-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]