GgaEX6017958 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:440138-440629:+
Coord C1 exon
chr2:440138-440265
Coord A exon
chr2:440336-440481
Coord C2 exon
chr2:440583-440629
Length
146 bp
Sequences
Splice sites
3' ss Seq
AGGGTCCCCATCACCCGCAGGTG
3' ss Score
8.41
5' ss Seq
GTGGTGCGT
5' ss Score
6.46
Exon sequences
Seq C1 exon
AGTGTCCCCGCAGCCAGGTGCACAGGGAGTGTGCCAACGCCTGTCCCCATGCCTGCGCCGACCTGCGTCCACAGACACAGTGCCTACCACAGCCCTGCCAGCCTGGTTGTGCCTGCCCGCCCGGACAG
Seq A exon
GTGCTGCAGGATGGAGCCTGTGTGCCCCCCGAGGAGTGCCGCTGCACACTCGACTCCACCATGCCCGGAGTGCTCAACCTGTCACGGGAGGAGCAAGAGCAGGAGCACGCACCGGGCAGCCGCCTGCAGCACCGCTGCAACACGTG
Seq C2 exon
CGTTTGCATCCGTGGCACCTTCAACTGCTCGCAGGAGGAGTGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'96-96,'96-95,97-96=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.204 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(74.5=95.3)
A:
PF0182612=TIL=PD(21.8=24.5),PF053758=Pacifastin_I=PU(40.0=24.5)
C2:
PF053758=Pacifastin_I=FE(53.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGGTGCACAGGGAG
R:
CATTGCACTCCTCCTGCGAG
Band lengths:
164-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]